Am I correct in assuming the steps per mm in the Redeem software configuration

Am I correct in assuming the steps per mm in the Redeem software configuration file is using the stepper steps per rotation before applying any micro stepping? The default values are a lot lower than I am use to seeing. We usually specify the steps per mm calculated after the micro stepping has been applied (200steps/mm * 1/16 micro steps = 3200 / 40 (20 tooth pulley) = 80 steps per mm where the cupcake config is showing 5. Just need to change my way of thinking (makerbot and repetier firmware) if so.

@James_Armstrong yes, the steps_pr_mm settings are before any microstepping is applied.